line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
# -*-CPerl-*- |
2
|
|
|
|
|
|
|
# Last changed Time-stamp: <2017-03-09 16:16:55 michl> |
3
|
|
|
|
|
|
|
|
4
|
|
|
|
|
|
|
# Bio::RNA::RNAaliSplit::FileDir.pm: A Moose Role for basic file IO |
5
|
|
|
|
|
|
|
|
6
|
|
|
|
|
|
|
package Bio::RNA::RNAaliSplit::FileDir; |
7
|
|
|
|
|
|
|
|
8
|
1
|
|
|
1
|
|
657
|
use version; our $VERSION = qv('0.04'); |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
10
|
|
9
|
1
|
|
|
1
|
|
75
|
use Moose::Util::TypeConstraints; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
9
|
|
10
|
1
|
|
|
1
|
|
1833
|
use Moose::Role; |
|
1
|
|
|
|
|
3133
|
|
|
1
|
|
|
|
|
3
|
|
11
|
1
|
|
|
1
|
|
4221
|
use Path::Class::File; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
26
|
|
12
|
1
|
|
|
1
|
|
4
|
use Path::Class::Dir; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
149
|
|
13
|
|
|
|
|
|
|
|
14
|
|
|
|
|
|
|
subtype 'MyFile' => as class_type('Path::Class::File'); |
15
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
coerce 'MyFile' |
17
|
|
|
|
|
|
|
=> from 'Str' |
18
|
|
|
|
|
|
|
=> via { Path::Class::File->new($_) }; |
19
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
subtype 'MyDir' => as class_type('Path::Class::Dir'); |
21
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
coerce 'MyDir' |
23
|
|
|
|
|
|
|
=> from 'ArrayRef' |
24
|
|
|
|
|
|
|
=> via { Path::Class::Dir->new( @{ $_ } ) }; |
25
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
has 'ifile' => ( |
27
|
|
|
|
|
|
|
is => 'ro', |
28
|
|
|
|
|
|
|
isa => 'MyFile', |
29
|
|
|
|
|
|
|
predicate => 'has_ifile', |
30
|
|
|
|
|
|
|
coerce => 1, |
31
|
|
|
|
|
|
|
); |
32
|
|
|
|
|
|
|
|
33
|
|
|
|
|
|
|
has 'odir' => ( |
34
|
|
|
|
|
|
|
is => 'rw', |
35
|
|
|
|
|
|
|
isa => 'MyDir', |
36
|
|
|
|
|
|
|
predicate => 'has_odir', |
37
|
|
|
|
|
|
|
coerce => 1, |
38
|
|
|
|
|
|
|
); |
39
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
has 'odirn' => ( # custom output dir name |
41
|
|
|
|
|
|
|
is => 'rw', |
42
|
|
|
|
|
|
|
isa => 'Path::Class::Dir', |
43
|
|
|
|
|
|
|
predicate => 'has_odirn', |
44
|
|
|
|
|
|
|
); |
45
|
|
|
|
|
|
|
|
46
|
|
|
|
|
|
|
|
47
|
1
|
|
|
1
|
|
5
|
no Moose; |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
5
|
|
48
|
|
|
|
|
|
|
|
49
|
|
|
|
|
|
|
1; |