line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
package Bio::MUST::Drivers::Blast; |
2
|
|
|
|
|
|
|
# ABSTRACT: Bio::MUST driver for running the NCBI-BLAST+ suite of programs |
3
|
|
|
|
|
|
|
$Bio::MUST::Drivers::Blast::VERSION = '0.210160'; |
4
|
5
|
|
|
5
|
|
37
|
use strict; |
|
5
|
|
|
|
|
11
|
|
|
5
|
|
|
|
|
162
|
|
5
|
5
|
|
|
5
|
|
29
|
use warnings; |
|
5
|
|
|
|
|
10
|
|
|
5
|
|
|
|
|
135
|
|
6
|
|
|
|
|
|
|
|
7
|
5
|
|
|
5
|
|
2474
|
use Bio::MUST::Drivers::Blast::Database; |
|
5
|
|
|
|
|
22
|
|
|
5
|
|
|
|
|
230
|
|
8
|
5
|
|
|
5
|
|
3770
|
use Bio::MUST::Drivers::Blast::Database::Temporary; |
|
5
|
|
|
|
|
21
|
|
|
5
|
|
|
|
|
272
|
|
9
|
|
|
|
|
|
|
|
10
|
|
|
|
|
|
|
1; |
11
|
|
|
|
|
|
|
|
12
|
|
|
|
|
|
|
__END__ |
13
|
|
|
|
|
|
|
|
14
|
|
|
|
|
|
|
=pod |
15
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
=head1 NAME |
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
Bio::MUST::Drivers::Blast - Bio::MUST driver for running the NCBI-BLAST+ suite of programs |
19
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
=head1 VERSION |
21
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
version 0.210160 |
23
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
=head1 SYNOPSIS |
25
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
# TODO |
27
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
=head1 DESCRIPTION |
29
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
# TODO |
31
|
|
|
|
|
|
|
|
32
|
|
|
|
|
|
|
=head1 AUTHOR |
33
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
Denis BAURAIN <denis.baurain@uliege.be> |
35
|
|
|
|
|
|
|
|
36
|
|
|
|
|
|
|
=head1 COPYRIGHT AND LICENSE |
37
|
|
|
|
|
|
|
|
38
|
|
|
|
|
|
|
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN. |
39
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
This is free software; you can redistribute it and/or modify it under |
41
|
|
|
|
|
|
|
the same terms as the Perl 5 programming language system itself. |
42
|
|
|
|
|
|
|
|
43
|
|
|
|
|
|
|
=cut |