File Coverage

blib/lib/Bio/MUST/Drivers.pm

Criterion	Covered	Total	%
statement	30	30	100.0
branch			n/a
condition			n/a
subroutine	10	10	100.0
pod			n/a
total	40	40	100.0

package Bio::MUST::Drivers;
# ABSTRACT: Bio::MUST classes for driving external programs
# CONTRIBUTOR: Arnaud DI FRANCO <[e-mail]>
# CONTRIBUTOR: Amandine BERTRAND <[e-mail]>
# CONTRIBUTOR: Loic MEUNIER <[e-mail]>
$Bio::MUST::Drivers::VERSION = '0.191910';
use strict;
use warnings;

use Bio::MUST::Drivers::Blast;
use Bio::MUST::Drivers::Hmmer;
use Bio::MUST::Drivers::Cap3;
use Bio::MUST::Drivers::CdHit;
use Bio::MUST::Drivers::Exonerate;
use Bio::MUST::Drivers::Exonerate::Aligned;
use Bio::MUST::Drivers::ClustalO;
use Bio::MUST::Drivers::Mafft;

1;

__END__

=pod

=head1 NAME

Bio::MUST::Drivers - Bio::MUST classes for driving external programs

=head1 VERSION

version 0.191910

=head1 SYNOPSIS

    # TODO

=head1 DESCRIPTION

External dependencies are installed automatically at first use if the C<brew>
executable is available in the C<$PATH>. Alternatively, dependencies can be
installed (either using C<apt-get>, C<brew> or manually) by the user prior or
after installing the distribution itself. C<brew> is the main command of the I<Homebrew> package manager L<https://brew.sh/>.

Note that any test requiring a missing dependency is skipped when testing.

=head1 AUTHOR

Denis BAURAIN <[e-mail]>

=head1 CONTRIBUTORS

=for stopwords Arnaud DI FRANCO Amandine BERTRAND Loic MEUNIER

=over 4

=item *

Arnaud DI FRANCO <[e-mail]>

=item *

Amandine BERTRAND <[e-mail]>

=item *

Loic MEUNIER <[e-mail]>

=back

=head1 COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.

=cut