line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
# ABSTRACT: Internal (base) class for all FastParsers |
2
|
|
|
|
|
|
|
$Bio::FastParsers::Base::VERSION = '0.221230'; |
3
|
|
|
|
|
|
|
use Moose; |
4
|
7
|
|
|
7
|
|
4829
|
use namespace::autoclean; |
|
7
|
|
|
|
|
19
|
|
|
7
|
|
|
|
|
43
|
|
5
|
7
|
|
|
7
|
|
42161
|
|
|
7
|
|
|
|
|
18
|
|
|
7
|
|
|
|
|
60
|
|
6
|
|
|
|
|
|
|
use Bio::FastParsers::Types; |
7
|
7
|
|
|
7
|
|
3765
|
|
|
7
|
|
|
|
|
21
|
|
|
7
|
|
|
|
|
580
|
|
8
|
|
|
|
|
|
|
|
9
|
|
|
|
|
|
|
# public attributes |
10
|
|
|
|
|
|
|
|
11
|
|
|
|
|
|
|
|
12
|
|
|
|
|
|
|
has 'file' => ( |
13
|
|
|
|
|
|
|
is => 'ro', |
14
|
|
|
|
|
|
|
isa => 'Bio::FastParsers::Types::File', |
15
|
|
|
|
|
|
|
required => 1, |
16
|
|
|
|
|
|
|
coerce => 1, |
17
|
|
|
|
|
|
|
handles => { |
18
|
|
|
|
|
|
|
remove => 'remove', |
19
|
|
|
|
|
|
|
filename => 'stringify', |
20
|
|
|
|
|
|
|
}, |
21
|
|
|
|
|
|
|
); |
22
|
|
|
|
|
|
|
|
23
|
|
|
|
|
|
|
# TODO: document and test delegated methods (now done in Bio-MUST-Drivers) |
24
|
|
|
|
|
|
|
|
25
|
|
|
|
|
|
|
__PACKAGE__->meta->make_immutable; |
26
|
|
|
|
|
|
|
1; |
27
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
|
29
|
|
|
|
|
|
|
=pod |
30
|
|
|
|
|
|
|
|
31
|
|
|
|
|
|
|
=head1 NAME |
32
|
|
|
|
|
|
|
|
33
|
|
|
|
|
|
|
Bio::FastParsers::Base - Internal (base) class for all FastParsers |
34
|
|
|
|
|
|
|
|
35
|
|
|
|
|
|
|
=head1 VERSION |
36
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
version 0.221230 |
38
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
=head1 DESCRIPTION |
40
|
|
|
|
|
|
|
|
41
|
|
|
|
|
|
|
Nothing to see here. |
42
|
|
|
|
|
|
|
|
43
|
|
|
|
|
|
|
=head1 ATTRIBUTES |
44
|
|
|
|
|
|
|
|
45
|
|
|
|
|
|
|
=head2 file |
46
|
|
|
|
|
|
|
|
47
|
|
|
|
|
|
|
Path to report file to be parsed |
48
|
|
|
|
|
|
|
|
49
|
|
|
|
|
|
|
=head1 AUTHOR |
50
|
|
|
|
|
|
|
|
51
|
|
|
|
|
|
|
Denis BAURAIN <denis.baurain@uliege.be> |
52
|
|
|
|
|
|
|
|
53
|
|
|
|
|
|
|
=head1 COPYRIGHT AND LICENSE |
54
|
|
|
|
|
|
|
|
55
|
|
|
|
|
|
|
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN. |
56
|
|
|
|
|
|
|
|
57
|
|
|
|
|
|
|
This is free software; you can redistribute it and/or modify it under |
58
|
|
|
|
|
|
|
the same terms as the Perl 5 programming language system itself. |
59
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
=cut |