line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
package Algorithm::LCSS; |
2
|
|
|
|
|
|
|
|
3
|
1
|
|
|
1
|
|
6788
|
use 5.006; |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
42
|
|
4
|
1
|
|
|
1
|
|
5
|
use strict; |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
32
|
|
5
|
1
|
|
|
1
|
|
5
|
use warnings; |
|
1
|
|
|
|
|
8
|
|
|
1
|
|
|
|
|
43
|
|
6
|
1
|
|
|
1
|
|
1169
|
use Algorithm::Diff qw(traverse_sequences); |
|
1
|
|
|
|
|
7119
|
|
|
1
|
|
|
|
|
98
|
|
7
|
|
|
|
|
|
|
require Exporter; |
8
|
1
|
|
|
1
|
|
10
|
use vars qw( @ISA @EXPORT_OK $VERSION ); |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
937
|
|
9
|
|
|
|
|
|
|
our @ISA = qw(Exporter); |
10
|
|
|
|
|
|
|
@EXPORT_OK = qw( LCSS CSS CSS_Sorted ); |
11
|
|
|
|
|
|
|
$VERSION = '0.01'; |
12
|
|
|
|
|
|
|
|
13
|
4
|
|
|
4
|
|
52
|
sub _tokenize { [split //, $_[0]] } |
14
|
|
|
|
|
|
|
|
15
|
|
|
|
|
|
|
sub CSS { |
16
|
4
|
100
|
|
4
|
1
|
13
|
my $is_array = ref $_[0] eq 'ARRAY' ? 1 : 0; |
17
|
4
|
|
|
|
|
5
|
my ( $seq1, $seq2, @match, $from_match ); |
18
|
4
|
|
|
|
|
6
|
my $i = 0; |
19
|
4
|
100
|
|
|
|
9
|
if ( $is_array ) { |
20
|
2
|
|
|
|
|
3
|
$seq1 = $_[0]; |
21
|
2
|
|
|
|
|
2
|
$seq2 = $_[1]; |
22
|
|
|
|
|
|
|
traverse_sequences( $seq1, $seq2, { |
23
|
26
|
|
|
26
|
|
104
|
MATCH => sub { push @{$match[$i]}, $seq1->[$_[0]]; $from_match = 1 }, |
|
26
|
|
|
|
|
46
|
|
|
26
|
|
|
|
|
53
|
|
24
|
26
|
100
|
|
26
|
|
81
|
DISCARD_A => sub { do{$i++; $from_match = 0} if $from_match }, |
|
2
|
|
|
|
|
2
|
|
|
2
|
|
|
|
|
4
|
|
25
|
26
|
100
|
|
26
|
|
1382
|
DISCARD_B => sub { do{$i++; $from_match = 0} if $from_match }, |
|
4
|
|
|
|
|
4
|
|
|
4
|
|
|
|
|
10
|
|
26
|
2
|
|
|
|
|
23
|
}); |
27
|
|
|
|
|
|
|
} |
28
|
|
|
|
|
|
|
else { |
29
|
2
|
|
|
|
|
8
|
$seq1 = _tokenize($_[0]); |
30
|
2
|
|
|
|
|
10
|
$seq2 = _tokenize($_[1]); |
31
|
|
|
|
|
|
|
traverse_sequences( $seq1, $seq2, { |
32
|
26
|
|
|
26
|
|
108
|
MATCH => sub { $match[$i] .= $seq1->[$_[0]]; $from_match = 1 }, |
|
26
|
|
|
|
|
41
|
|
33
|
26
|
100
|
|
26
|
|
84
|
DISCARD_A => sub { do{$i++; $from_match = 0} if $from_match }, |
|
2
|
|
|
|
|
3
|
|
|
2
|
|
|
|
|
4
|
|
34
|
26
|
100
|
|
26
|
|
1389
|
DISCARD_B => sub { do{$i++; $from_match = 0} if $from_match }, |
|
4
|
|
|
|
|
4
|
|
|
4
|
|
|
|
|
9
|
|
35
|
2
|
|
|
|
|
32
|
}); |
36
|
|
|
|
|
|
|
} |
37
|
4
|
|
|
|
|
55
|
return \@match; |
38
|
|
|
|
|
|
|
} |
39
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
sub CSS_Sorted { |
41
|
2
|
|
|
2
|
1
|
298
|
my $match = CSS(@_); |
42
|
2
|
100
|
|
|
|
6
|
if ( ref $_[0] eq 'ARRAY' ) { |
43
|
1
|
|
|
|
|
2
|
@$match = map{$_->[0]}sort{$b->[1]<=>$a->[1]}map{[$_,scalar(@$_)]}@$match |
|
3
|
|
|
|
|
6
|
|
|
2
|
|
|
|
|
5
|
|
|
3
|
|
|
|
|
8
|
|
44
|
|
|
|
|
|
|
} |
45
|
|
|
|
|
|
|
else { |
46
|
1
|
|
|
|
|
3
|
@$match = map{$_->[0]}sort{$b->[1]<=>$a->[1]}map{[$_,length($_)]}@$match |
|
3
|
|
|
|
|
7
|
|
|
2
|
|
|
|
|
7
|
|
|
3
|
|
|
|
|
13
|
|
47
|
|
|
|
|
|
|
} |
48
|
2
|
|
|
|
|
7
|
return $match; |
49
|
|
|
|
|
|
|
} |
50
|
|
|
|
|
|
|
|
51
|
|
|
|
|
|
|
sub LCSS { |
52
|
2
|
100
|
|
2
|
1
|
222
|
my $is_array = ref $_[0] eq 'ARRAY' ? 1 : 0; |
53
|
2
|
|
|
|
|
4
|
my $css = CSS(@_); |
54
|
2
|
|
|
|
|
3
|
my $index; |
55
|
2
|
|
|
|
|
3
|
my $length = 0; |
56
|
2
|
100
|
|
|
|
6
|
if ( $is_array ) { |
57
|
1
|
|
|
|
|
31
|
for( my $i = 0; $i < @$css; $i++ ) { |
58
|
3
|
100
|
|
|
|
5
|
next unless @{$css->[$i]}>$length; |
|
3
|
|
|
|
|
10
|
|
59
|
2
|
|
|
|
|
3
|
$index = $i; |
60
|
2
|
|
|
|
|
3
|
$length = @{$css->[$i]}; |
|
2
|
|
|
|
|
6
|
|
61
|
|
|
|
|
|
|
} |
62
|
|
|
|
|
|
|
} |
63
|
|
|
|
|
|
|
else { |
64
|
1
|
|
|
|
|
6
|
for( my $i = 0; $i < @$css; $i++ ) { |
65
|
3
|
100
|
|
|
|
9
|
next unless length($css->[$i])>$length; |
66
|
2
|
|
|
|
|
2
|
$index = $i; |
67
|
2
|
|
|
|
|
8
|
$length = length($css->[$i]); |
68
|
|
|
|
|
|
|
} |
69
|
|
|
|
|
|
|
} |
70
|
2
|
|
|
|
|
17
|
return $css->[$index]; |
71
|
|
|
|
|
|
|
} |
72
|
|
|
|
|
|
|
|
73
|
|
|
|
|
|
|
1; |
74
|
|
|
|
|
|
|
__END__ |